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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.128620.1 | ||||||||
Common Name | Csa_7G413890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 32358.5 Da PI: 4.9791 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.2e-18 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd l ++v+ +G g+W+++ar+ g++Rt+k+c++rw++yl Cucsa.128620.1 27 KGPWTAEEDSVLFNYVNCHGEGRWNAVARCTGLKRTGKSCRLRWLNYL 74 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Cucsa.128620.1 80 RGNITLQEQLLILELHFRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 123 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.141 | 22 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-10 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 17.209 | 79 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-13 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-14 | 80 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-21 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.38E-6 | 100 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDVKMRGFRC GEPQKIKEEE EEMDVRKGPW TAEEDSVLFN YVNCHGEGRW NAVARCTGLK 60 RTGKSCRLRW LNYLRPSVRR GNITLQEQLL ILELHFRWGN RWSKIAQYLP GRTDNEIKNY 120 WRTRVQKQAK QLNCDVNSKQ FRDAMRYVWM PRLLERIQAS TDSTTTIVDV IQPPHPPLEL 180 TQSSPSGSSW VNPHVAPTTS SSDSISDQVQ LQVSPVSDMT ENFNMVDKSE EDGMMMLMEH 240 GCDGEAMINE WIGGGEVLEN GLWNEEDMWT LLQQQFGDDV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 24 | 129 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ036901 | 0.0 | FJ036901.1 Cucumis sativus clone CU20C06 myb-like transcription factor Myb5 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136147.2 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9LDE1 | 2e-75 | MY108_ARATH; Transcription factor MYB108 | ||||
TrEMBL | A0A0A0K5V3 | 0.0 | A0A0A0K5V3_CUCSA; Uncharacterized protein | ||||
STRING | VIT_07s0005g01950.t01 | 2e-92 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 1e-77 | myb domain protein 78 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.128620.1 |
Publications ? help Back to Top | |||
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